🍅

Tomato Blossom End Rot: Complete Guide

Everything you need to know about fixing and preventing the dark, sunken spots on the bottom of your tomatoes

12 min readUpdated January 2025

Quick Answer

Blossom end rot appears as dark, sunken spots on the bottom of tomatoes. It's caused by calcium deficiency in the fruit, usually from inconsistent watering rather than lack of calcium in soil. Fix it with consistent deep watering (1-2 inches per week), mulching to stabilize soil moisture, and balanced fertilization. Affected fruit cannot be saved, but correcting the cause prevents it in new fruit.

Understanding Blossom End Rot

Blossom end rot is one of the most common and frustrating problems that tomato growers face, affecting gardeners from beginners to experienced veterans. The good news is that while it looks alarming, blossom end rot is not a disease caused by pathogens - it's a physiological disorder that can be prevented and managed with proper cultural practices. Understanding the underlying causes is the first step toward keeping your tomatoes healthy and productive throughout the growing season.

What is Blossom End Rot?

Blossom end rot (commonly abbreviated as BER) is a physiological disorder - not a disease - that affects tomatoes, peppers, squash, and other fruiting vegetables. It manifests as a water-soaked spot on the blossom end (the bottom) of the fruit that starts small but gradually expands, turning dark brown or black and becoming sunken and leathery as it progresses. The affected area can eventually cover up to half of the fruit's surface.

While it may look like a fungal or bacterial infection, blossom end rot is actually caused by a localized calcium deficiency in the developing fruit tissue. The plant may have plenty of calcium available in the soil and even in its leaves, but for various reasons, it cannot transport sufficient calcium to the rapidly growing fruit at the critical time when cell walls are forming.

Understanding this distinction is crucial because it means the solution lies not in fungicides or other disease treatments, but in addressing the environmental and cultural factors that prevent proper calcium uptake and transport within the plant.

Identifying Blossom End Rot

Recognizing blossom end rot early allows you to take corrective action before more fruit is affected. Here are the telltale signs to watch for throughout the growing season:

  • Location: The damage always appears on the blossom end (bottom) of the fruit, opposite from where the stem attaches. This is because calcium moves to the fruit last, and the blossom end is the furthest point from the stem.
  • Initial appearance: Starts as a small, water-soaked, light tan spot that may be hard to notice at first. The affected area feels softer than surrounding tissue.
  • Progression: The spot enlarges and darkens to brown or black, becoming sunken and developing a leathery texture. In severe cases, it can affect half the fruit.
  • Timing: Most commonly appears on the first fruits to set on the plant, when the plant is still establishing its root system and is most vulnerable to water stress.
  • Secondary issues: The damaged tissue may become infected by secondary fungal pathogens, causing further decay that can spread beyond the original BER-affected area.

The Four Main Causes of Blossom End Rot

1. Inconsistent Watering (Primary Cause)

Why it happens: Calcium is transported through plants via water in the xylem vessels, moving from roots to leaves and fruit. When watering is irregular - alternating between drought stress and heavy watering - this transport system is disrupted. During dry periods, calcium movement slows or stops entirely. Even brief water stress during the critical period when fruit cells are rapidly dividing can cause permanent damage that manifests as BER days or weeks later.

Signs this is your problem: Soil frequently swings from very dry (cracked surface, wilting plants) to saturated after watering. Plants wilt noticeably between waterings or during hot afternoons. BER appears after periods of drought or heat waves. Container-grown tomatoes are especially affected because pots dry out quickly. For proper watering techniques, see our watering guide.

Solution: Establish consistent, deep watering practices. Provide 1-2 inches of water per week through drip irrigation or soaker hoses rather than overhead sprinklers. Water deeply 2-3 times per week rather than shallow daily watering - this encourages deep root growth that makes plants more drought-resistant. Check soil moisture regularly by inserting your finger 2-3 inches into the soil; it should feel consistently moist but not waterlogged.

2. Calcium Uptake Issues

Why it happens: Even when soil contains adequate calcium, several factors can prevent plants from absorbing it effectively. Soil pH outside the optimal range (6.2-6.8 for tomatoes) makes calcium chemically unavailable. Competition from other nutrients - particularly excess nitrogen, potassium, or magnesium - can block calcium uptake at the root level. Damaged or underdeveloped root systems simply cannot absorb enough calcium to meet the demands of rapidly growing fruit.

Signs this is your problem: Young, rapidly growing fruit is affected first while older fruit may be fine. Leaf tips may show browning or curling (calcium deficiency symptoms in foliage). You've been fertilizing heavily, especially with high-nitrogen formulas. Soil hasn't been tested recently and pH is unknown. Plants were recently transplanted or had root disturbance.

Solution: Test your soil pH and adjust if necessary - add lime to raise pH if soil is too acidic (below 6.2). Use balanced fertilizers rather than high-nitrogen formulas that stimulate excessive vegetative growth. Add gypsum (calcium sulfate) to provide calcium without affecting soil pH, or use bone meal for a slower-release calcium source. Avoid disturbing roots when cultivating around plants. For container plants, use quality potting mix with added lime. Learn more in our soil mix guide.

3. Environmental Stress

Why it happens: Rapid temperature fluctuations, extreme heat, high humidity, and damaged root systems all stress plants and disrupt the delicate process of calcium transport. Heat causes plants to transpire rapidly, pulling water and calcium preferentially to leaves rather than fruit. Temperature swings cause uneven growth rates that outpace calcium delivery. Container plants are particularly vulnerable because pot temperatures can swing dramatically, cooking roots in black plastic containers or causing rapid moisture loss.

Signs this is your problem: BER appears during or shortly after heat waves (several days above 90°F). Problems are worse in containers than in ground plantings, especially in dark-colored pots. BER occurred after transplanting or root disturbance. Plants are in exposed locations with no afternoon shade protection.

Solution: Apply 2-3 inches of organic mulch (straw, shredded leaves, grass clippings) around plants to moderate soil temperature and retain moisture. Provide light afternoon shade during extreme heat using shade cloth or strategic placement near taller plants. Be extremely gentle when cultivating to avoid damaging shallow feeder roots. For containers, use light-colored pots at least 5 gallons in size, consider double-potting (placing the grow container inside a larger decorative pot) for insulation, and move pots to afternoon shade during heat waves.

4. Over-Fertilization

Why it happens: Excessive nitrogen fertilization is a common culprit in blossom end rot cases. High nitrogen levels stimulate rapid vegetative growth - lots of lush green foliage - at the expense of fruit development. This fast-growing tissue demands more calcium than the plant can supply, especially if water uptake is inconsistent. Additionally, excess nitrogen, potassium, and magnesium compete with calcium for uptake sites in the root system, effectively blocking calcium absorption even when soil levels are adequate.

Signs this is your problem: Plants have exceptionally lush, dark green foliage with vigorous vegetative growth. Lots of flowers but poor fruit set or small fruit. Soil has a white crusty appearance (salt buildup from fertilizer). You've been fertilizing frequently or using high-nitrogen formulas designed for lawns or leafy vegetables.

Solution: Switch to balanced fertilizers with lower nitrogen content - look for formulas like 10-10-10 or 5-10-10 where the first number (nitrogen) isn't dramatically higher than the others. Follow package directions carefully and resist the temptation to add extra - more fertilizer does not mean more or better fruit. Consider organic slow-release fertilizers like compost or well-rotted manure that release nutrients gradually. If you suspect salt buildup, flush containers with plain water to leach excess salts from the soil.

Treatment: What to Do Right Now

If you've discovered blossom end rot on your tomatoes, don't despair - while affected fruit cannot be saved, you can absolutely prevent the problem from continuing. Here's your action plan for immediate intervention and long-term prevention. Most gardeners see improvement in new fruit within 1-2 weeks of implementing these changes.

1

Remove Affected Fruit Immediately

Pick off all tomatoes showing blossom end rot symptoms without delay. These fruits will not recover, and leaving them on the plant wastes energy that could go toward developing healthy fruit. The damaged tissue may also attract secondary fungal infections that could spread. The unaffected portion of BER tomatoes is perfectly safe to eat - simply cut away the damaged section and use the rest in cooking or salads.

2

Establish a Consistent Watering Schedule

Begin watering deeply and consistently right away - this is the single most important step. Water 2-3 times per week, providing enough water to moisten the soil 6-8 inches deep. Use your finger to check soil moisture at 2-3 inch depth; it should feel like a wrung-out sponge - moist but not soggy. In hot weather (above 85°F), you may need to water more frequently. Set up drip irrigation or soaker hoses if possible for more even moisture delivery.

3

Apply Mulch Generously

Add 2-3 inches of organic mulch (straw, shredded leaves, grass clippings, or wood chips) around your plants, keeping it a few inches away from the stem to prevent rot. Mulch serves multiple purposes: it regulates soil temperature, retains moisture between waterings, suppresses weeds that compete for water and nutrients, and gradually adds organic matter to the soil as it breaks down. This simple step dramatically reduces the moisture fluctuations that cause BER.

4

Add Calcium If Watering Changes Don't Help

If consistent watering and mulching don't improve the situation within 2 weeks, consider adding calcium. For immediate results, apply a calcium chloride foliar spray directly to leaves and developing fruit (follow package directions carefully to avoid leaf burn). For longer-term improvement, work gypsum (calcium sulfate) into the soil around plants - it provides calcium without altering soil pH. Bone meal is another option that releases calcium slowly over the season. Note that crushed eggshells, while popular, break down too slowly to help current-season fruit.

5

Adjust Your Fertilization Approach

If you've been using high-nitrogen fertilizer, stop immediately and switch to a balanced formula (10-10-10 or similar) or one formulated specifically for tomatoes. Reduce feeding frequency - once every 2-3 weeks is usually sufficient for established plants. If plants have lush, dark green foliage, skip fertilizing entirely for 2-3 weeks to allow growth to moderate. Over-fertilized plants often "grow out" of BER problems once vegetative growth slows.

Expert Tips for BER Prevention

Pro Tips from Experienced Tomato Growers

  • 1.

    Water in the morning: Morning watering allows foliage to dry during the day (reducing disease risk) while ensuring plants have adequate moisture during peak heat and photosynthesis hours. Evening watering can leave foliage wet overnight, promoting fungal problems.

  • 2.

    Don't remove lower leaves prematurely: Those lower leaves are photosynthesizing and contributing to the plant's overall calcium uptake. Wait until fruit on a particular truss is nearly ripe before removing leaves below it.

  • 3.

    Size containers appropriately: For tomatoes in containers, bigger is always better. Use at least 5-gallon containers (10-15 gallons is ideal) to buffer moisture and temperature swings. Avoid black plastic containers that heat up excessively in sun.

  • 4.

    Choose resistant varieties: Some tomato varieties are naturally less prone to BER. Cherry tomatoes and smaller-fruited varieties are generally less affected than large beefsteak types. Paste tomatoes (like Roma and San Marzano) are particularly susceptible. If BER is a recurring problem, try varieties specifically noted for BER resistance.

  • 5.

    Expect early-season issues: It's normal for the first fruits of the season to show BER while later fruits are fine. This happens because plants are still establishing roots when early fruit is setting. Don't panic if you see BER early - focus on consistent care and later fruit will likely be unaffected.

Prevention: Stop BER Before It Starts

The best approach to blossom end rot is prevention through consistent cultural practices from the beginning of the season. These strategies create the stable growing conditions that tomato plants need to properly uptake and distribute calcium to developing fruit.

  • Consistent watering is the foundation: Set up drip irrigation or soaker hoses from the start of the season for the most even moisture delivery. Water deeply 2-3 times weekly rather than shallow daily watering - this encourages deep root growth that makes plants more resilient to temporary dry spells. Aim for 1-2 inches of water per week, adjusting upward during heat waves.
  • Mulch immediately after planting: Apply 2-3 inches of organic mulch as soon as you transplant. This stabilizes soil temperature and moisture from day one, preventing the fluctuations that trigger BER. Replenish mulch as it breaks down throughout the season.
  • Test and optimize soil pH before planting: Test your soil and aim for pH between 6.2-6.8 for optimal calcium availability. Add lime if soil is too acidic (below 6.2) or sulfur if too alkaline (above 7.0). It takes several weeks for pH amendments to fully take effect, so test and adjust well before planting season.
  • Use balanced fertilizer from the start: Avoid high-nitrogen formulas that promote excessive vegetative growth. Choose fertilizers with balanced NPK ratios (10-10-10 or similar) or those specifically formulated for tomatoes. Apply at planting and side-dress lightly every 2-3 weeks once fruit begins to set.
  • Select appropriate varieties: If BER has been a persistent problem, choose varieties known for resistance. Cherry tomatoes, grape tomatoes, and smaller-fruited determinate varieties are generally less susceptible than large beefsteak types or paste tomatoes. Ask local gardeners or your extension service for variety recommendations suited to your climate.
  • Protect roots from damage: Be extremely gentle when weeding or cultivating around tomato plants. Use mulch to suppress weeds rather than hoeing, which can damage shallow feeder roots. Damaged roots can't absorb calcium effectively, triggering BER even with perfect watering.
  • Plan for heat protection: In climates with extreme summer heat, plan for afternoon shade protection before temperatures peak. Plant where taller crops or structures provide afternoon shade, or have shade cloth ready to deploy during heat waves. This is especially important for container tomatoes.

Frequently Asked Questions

What causes blossom end rot in tomatoes?

Blossom end rot is caused by calcium deficiency in developing fruit, but this is typically due to inconsistent watering rather than lack of calcium in the soil. When soil moisture fluctuates dramatically between dry and wet conditions, the plant's roots cannot absorb calcium effectively, even when plenty is available in the soil. Other contributing factors include root damage from cultivation, rapid plant growth from excessive nitrogen fertilization, and extreme temperature fluctuations that stress the plant.

Can I save tomatoes with blossom end rot?

Unfortunately, tomatoes that have already developed blossom end rot cannot be reversed or cured - the damaged tissue will not heal. However, the unaffected portion of the tomato is perfectly safe to eat; simply cut away the damaged section. The important thing is to remove affected fruit promptly and correct the underlying cause (usually inconsistent watering) to prevent the condition from affecting new fruit developing on the plant.

How do I prevent blossom end rot from happening?

Prevention is the key to managing blossom end rot. Maintain consistent soil moisture by watering deeply 2-3 times per week rather than shallow daily watering. Apply 2-3 inches of organic mulch around plants to regulate soil temperature and moisture. Use balanced fertilizers and avoid high-nitrogen formulas that promote rapid growth at the expense of fruit development. Test soil pH and maintain it between 6.2-6.8 for optimal calcium availability. For container tomatoes, use large pots (5+ gallons) that buffer moisture fluctuations.

Does adding calcium actually fix blossom end rot?

Adding calcium can help if your soil is genuinely calcium-deficient, but this is rarely the actual problem. In most cases, blossom end rot occurs because inconsistent watering prevents plants from absorbing the calcium that's already present in the soil. Focus first on establishing consistent watering practices and applying mulch. If problems persist after 2-3 weeks of proper watering, you can apply calcium amendments like gypsum or calcium chloride foliar spray. Crushed eggshells are a popular home remedy but release calcium very slowly and won't help current-season fruit.

Why do only some of my tomatoes have blossom end rot?

Blossom end rot typically affects the first fruits to set on a plant most severely because these develop during the period when the plant is establishing its root system and is most vulnerable to water stress. As the season progresses and roots grow deeper, plants often 'grow out' of the problem. Additionally, certain tomato varieties (especially paste tomatoes and large-fruited varieties like Brandywine) are more susceptible than others. Fruit on the same plant may be affected differently based on when they set during periods of water stress.

Related Guides

Grow Perfect Tomatoes with AI-Powered Planning

Get a custom garden plan with optimal watering schedules, soil recommendations, variety selection, and companion planting strategies for thriving, disease-free tomatoes.